Start reanalyzing MassIVE datasets by clicking the “Reanalyze Spectra” button on the dataset page:

Image showing reanalyze button for MassIVE

This brings you to the ProteoSAFe data analysis workflow input form, with the dataset’s spectrum files pre-selected. From here you can configure and run your search on these files:

Image showing complete reanalysis setup for MassIVE

ProteoSAFe offers a variety of analysis tools to derive meaningful knowledge from a dataset’s spectrum files:

Workflow Link
Database Search MS-GF+
Spectral Library Search MSPLIT
Multi-Blind Modification Search MODa
De Novo Peptide Sequencing PepNovo
Proteogenomics Enosi
Multi-Pass Search Maestro