GNPS Tool Index¶

graph LR InputGCData(GC Mass Spectrometry Data) --> MSHUB[GNPS - MSHub Devonvolution] Massive --> InputGCData(GC Mass Spectrometry Data) Metabolights --> InputGCData(GC Mass Spectrometry Data) MSHUB --> GCLibrary[GNPS - GC Library Search and Networking] GCLibrary --> Qiime2PCOA InputLCData(LC MS/MS Vendor Mass Spectrometry Data) --> MSConvert[MSConvert] InputLCData --> Quickstart[GNPS - Quickstart] Quickstart --> OpenFormats(Open mzML Format) MSConvert --> OpenFormats Massive(MassIVE Public Data) --> InputLCData Metabolights(Metabolights Public Data) --> InputLCData PrivateData(Private MS Data) --> InputLCData PrivateData --> InputGCData OpenFormats --> GNPSDashboard Massive --> GNPSDashboard Metabolights --> GNPSDashboard Massive --> FBMN Massive --> ClassicalNetworking OpenFormats --> Dereplicator[GNPS - Dereplicator] OpenFormats --> Dereplicator+[GNPS - Dereplicator+] OpenFormats --> LibrarySearch(GNPS - Spectral Library Search) OpenFormats --> MSMS-Chooser(GNPS - MSMS-Chooser) --> LibraryBatch[GNPS - Batch Library Addition] LibraryBatch --> GNPSLibrary[GNPS - Public Spectral Librarires] OpenFormats --> LibrarySingle[GNPS - Single Library Addition] --> GNPSLibrary OpenFormats --> GNPSLibrary(GNPS - Public Spectral Libraries) OpenFormats --> LibraryBatch --> GNPSLibrary OpenFormats --> ClassicalNetworking[GNPS - Classical Molecular Networking] OpenFormats --> MZmine2[MZmine2 Feature Finding] --> FBMN OpenFormats --> OpenMS[OpenMS Feature Finding] --> FBMN OpenFormats --> XCMS[XCMS Feature Finding] --> FBMN OpenFormats --> MSDial[MSDial Feature Finding] --> FBMN OpenFormats --> GNPSMZmine2[GNPS - MZmine2 Feature Finding] --> FBMN MZmine2 --> FBMN[GNPS - Feature Based Molecular Networking] ClassicalNetworking --> MS2LDA[GNPS - MS2LDA Substructure Discovery] MS2LDA --> MS2LDAORG[MS2LDA.org Motif Exploration] ClassicalNetworking --> Qiime2PCOA[Qiime2 PCoA] ClassicalNetworking --> Cytoscape[Cytoscape Visualization] FBMN --> MS2LDA FBMN --> Cytoscape FBMN --> Qemistree FBMN --> Sirius FBMN --> NAP FBMN --> Qiime2PCOA ClassicalNetworking --> NAP[GNPS - Network Annotation Propogation] ClassicalNetworking --> MolNetEnhancer --> Cytoscape FBMN --> MolNetEnhancer[GNPS - MolNetEnhancer/MetaboDistTree] FBMN --> MergePolarity FBMN --> Esquisse[GNPS - Interactive Plotting with Esquisse] ClassicalNetworking --> MergePolarity[GNPS - Merge Network Polarity] Qemistree --> QemistreeDashboard(GNPS - Qemistree Interactive Dashboard) GNPSDashboard --> GNPSMZmine2 GNPSDashboard --> ClassicalNetworking FBMN --> GNPSDashboard ClassicalNetworking --> GNPSDashboard MSHUB --> GNPSDashboard GCLibrary --> GNPSDashboard Quickstart --> GNPSDashboard GNPSDashboard --> MetabolomicsUSI GNPSLibrary --> GNPSLibraryExporter FBMN --> Dereplicator[GNPS - Dereplicator] FBMN --> Dereplicator+[GNPS - Dereplicator+] FBMN --> MASST ClassicalNetworking --> MASST GNPSDashboard --> MASST OpenFormats --> MASST FBMN --> ChemProp OpenFormats --> Sirius style GNPSDashboard fill:pink style MetabolomicsUSI fill:pink style MS2LDAORG fill:pink style Qiime2PCOA fill:pink style QemistreeDashboard fill:pink style Esquisse fill:pink style Cytoscape fill:pink style GNPSLibraryExporter fill:pink style InputGCData fill:lightblue style InputLCData fill:lightblue style OpenFormats fill:lightblue style Massive fill:lightgrey style Metabolights fill:lightgrey style PrivateData fill:lightgrey