GNPS Workshops/Training
Upcoming Workshops and Events¶
| Venue | Description | Dates | Speakers/Instructors | Material |
|---|---|---|---|---|
If you would like to host a GNPS workshop together with the GNPS team, please reach out to Ming to organize the logistics!
Host Your Own¶
If you would like to organize your own GNPS workshop to train new users, try getting started with our standard training modules. If you would like more advanced materials, please reach out to Ming and we'd be happy to help you. For promotional materials check out our logo page.
GNPS Training Tutorial Modules¶
We have standard training tutorial modules on GNPS. These are available fully in GitHub.
Here is a table to briefly browse them
| Module | Description | Link |
|---|---|---|
| Module 1 | Classical Molecular Networking | Link |
| Module 2 | Molecular Molecular Theory | Link |
| Module 3 | Exploring Molecular Networks | Link |
| Module 4 | Cytoscape Networks | Link |
| Module 5 | Feature Based Molecular Networking | Link |
| Module 6 | MASST | Link |
| Module 7 | Qiime2 Analysis | Link |
| Module 8 | ReDU | Link |
| Module 10 | In Silico Analysis | Link |
| Module 11 | MolNetEnhancer | Link |
| Module 12 | MS2LDA | Link |
| Module 13 | Adding Reference Library Spectra | Link |
| Module 15 | Merge Network Polarity | Link |
| Module 16 | Metabolomics Spectrum Resolver | Link |
| Module 17 | ChemProp | Link |
| Module 18 | LCMS Dashboard | Link |
Previous Workshops¶
| Venue | Description | Dates | Speakers/Instructors | Material | Estimated Attendance |
|---|---|---|---|---|---|
| Tuebingen, Germany | International Summer School on Non-Targeted Metabolomics 2022 | 2022-08-22 to 26 | Organizers of the Summer School | Video | 75+online |
| CMFI Mass Spec Seminar | Zoom Video Series | 2022-02 | Daniel Petras organized series | Video | 20-100+ |
| CMFI Mass Spec Seminar | Molecular Networking | 2022-02-15 | Pieter Dorrestein and Daniel Petras | Video | 35 |
| Nature Microbiome 2021 GNPS Workshop | Food, Diet, and Microbiome | 2021-11-16 | Pieter Dorrestein and Mingxun Wang | Material Video | 300+ |
| UNIFAL-MG Brazil 2021 | Virtual class and hands-on: Applications of Mass Spectrometry in Pharmacotherapeutics development - MS Fundamentals to GNPS | 2021-11-05 | Mauricio Caraballo | Material | 25 |
| MANA 2021 | GNPS Workshop - Networking, Dashboard, MASST | 2021-10-18 | Mingxun Wang and Pieter Dorrestein | Material Video | 100 |
| Virtual Classroom | Exploratory Data Analysis with brief primers on MASST, Library Matching, Molecular Networking, & GNPS Dashboard | 2021-05-27 & 2021-05-12 | Teaching Practical Guides as part of course | No URL available | 25 |
| Zoom! | GNPS Dashboard - Overview | 5/12/2021 9AM PST | Mingxun Wang and Daniel Petras | Material Video | 140 |
| Zoom! | Basic principles of metabolomics-based MS data and GNPS tools for data analysis in Portuguese - Part 1 | 04/28/2020 9AM PST | Anelize Bauermeister, Tiago Leão, Naydja M. Maimone, Danielle R. P. Barros | Material Video | 450 |
| Zoom! | Basic principles of metabolomics-based MS data and GNPS tools for data analysis in Portuguese - Part 2 | 04/29/2020 9AM PST | Anelize Bauermeister, Tiago Leão, Naydja M. Maimone, Danielle R. P. Barros, Ricardo Silva | Material Video | 320 |
| Zoom! | GNPS Feature Based Molecular Networking in Portuguese - Part 1 | 12/09/2020 9AM PST | Anelize Bauermeister, Carlismari Grundmann, Helena Mannochio, Juliano Amaral, Tiago Leão | Material | 200 |
| Zoom! | GNPS Feature Based Molecular Networking in Portuguese - Part 2 | 12/10/2020 9AM PST | Anelize Bauermeister, Carlismari Grundmann, Helena Mannochio, Juliano Amaral, Tiago Leão | Material | 200 |
| Zoom! | SIO262 Molecular Networking Intro | 11/25/2020 15:30 PM PST | Daniel Petras, Mingxun Wang, | Video | 20 |
| Zoom! | GNPS LCMS Browser Workshop | 10/14/2020 9AM PST | Mingxun Wang, Daniel Petras | Material | 20 |
| Zoom! | 1st GNPS User Meeting | 8/26/2020 9AM PST | GNPS Community | Program Video | 300 |
| Zoom! | GNPS GC - Part 2 | 7/29/2020 9AM PST | Alexander Aksenov, Mabel Gonzalez | Material Video | 20 |
| Zoom! | GNPS Classical Molecular Networking in Portuguese | 7/22/2020 9AM PST | Anelize Bauermeister, Helena Mannochio | Material Video | 450 |
| Zoom! | GNPS ChemDir - Chemical Directionality for Longitudinal Molecular Networking | 7/15/2020 9AM PST | Daniel Petras, Mauricio Caraballo, Mingxun Wang | Material | 40 |
| Zoom! | GNPS Feature Based Molecular Networking in Espanol - Part 1 | 7/8/2020 9AM PST | Mauricio Caraballo, Daniel Petras | Material Video | 40 |
| Zoom! | GNPS Feature Based Molecular Networking in Espanol - Part 2 | 7/9/2020 9AM PST | Mauricio Caraballo, Daniel Petras | Material Video | 50 |
| Zoom! | Metabolomics Spectrum Resolver - Unifing spectrum rendering and customization | 7/1/2020 9AM PST | Mingxun Wang , Wout Bittremieux | Materials Video | 35 |
| Zoom! | GNPS - MS2LDA | 6/24/2020 9AM PST | Justin van der Hooft, Simon Rogers, Joe Wandy, Madeleine Ernst, Mingxun Wang | Material Video | 40 |
| Zoom! | GNPS Classical Molecular Networking in Español | 6/17/2020 9AM PST | Mauricio Caraballo, Mabel Gonzalez, Daniel Petras | Material Video | 60 |
| Zoom! | GNPS Merge Polarity Networks - Merging Networks from Positive and Negative Mode | 6/11/2020 9AM PST | Mingxun Wang, Allegra Aron | Material Video | 30 |
| Zoom! | GNPS MolNetEnhancer | 6/3/2020 9AM PST | Madeleine Ernst, Mauricio Caraballo, Mingxun Wang | Material Video | 47 |
| Zoom! | GC-MS deconvolution, library search and molecular networking | 5/27/2020 9AM PST | Alexander Aksenov, Mabel Gonzalez | Material Video | 44 |
| YouTube | Utilizing GNPS and MS2LDA for some molecular networking discovery | 5/21/2020 6AM PST | LiveStream | --- | |
| Zoom! | GNPS Ion-Identity Networking, Native Metabolomics | 5/20/2020 9AM PST | Robin Schmid, Daniel Petras, Allegra Aron | Material Video | 65 |
| Zoom! | GNPS Feature Based Molecular Networking (Job Submssions and Exploration) | 5/14/2020 9AM PST | Louis-Felix Nothias, Daniel Petras, Allegra Aron | Material | 103 |
| Zoom! | GNPS Feature Based Molecular Networking (MZmine2) | 5/13/2020 9AM PST | Daniel Petras, Allegra Aron | Material Video | 147 |
| Zoom! | GNPS ReDU | 5/6/2020 9AM PST | Alan Jarmusch, Mingxun Wang, Chrissy Aceves, Julia Gauglitz | Material Video | 40 |
| Zoom! | GNPS Classical Molecular Networking | 4/29/2020 9AM PST | Emily Gentry, Mingxun Wang, Morgan Panitchpakdi | Material Video | 60 |
| Zoom! | GNPS MASST | 4/22/2020 9AM PST | Mingxun Wang, Alan Jarmusch, Morgan Panitchpakdi, Emily Gentry | Material Video | 54 |
| Zoom! | GNPS Library Workshop/Hackathon | April 8 9AM PST | Mingxun Wang, Alan Jarmusch, Morgan Panitchpakdi, Emily Gentry | Material Video | 60 |
| UFMT Brazil | VI Workshop Etnofarmacologia - Use of the GNPS platform | Nov 18 - 28 2019 | Mauricio Caraballo | Download | 22 |
| MIT | Molecular Networking with MZmine and GNPS | Dec 5 2019 | Tomas Pluska, Daniel Petras, Robin Schmid | ----- | |
| ASP 2019 | GNPS Beginner/Advanced Workshop (3h) | July 2019 | Mingxun Wang, Pieter Dorrestein, Mauricio Caraballo | Download | 60 |
| RFMF2019, France | GNPS Beginner Workshop (4h) | May 20 | TBA | ||
| Metabolomics 2019 | GNPS Beginner Workshop (2h) | June 22 | Mingxun Wang, Madeleine Ernst, Zdenek Kamenik, Justin van der Hooft, Louis-Felix Nothias | Download | |
| Prague | GNPS Workshop (4h) | June 28 | Mingxun Wang, Louis-Felix Nothias, Robin Schmid, Justin van der Hooft | TBA | 20 |
| NPS2019 - Symposia of Natural Products | Natural Product Dereplication using GNPS | Feb 5, 2019 | Madeleine Ernst, Daniel Petras, Mauricio Caraballo, Pieter Dorrestein | Coming Soon! | |
| CCMS School - Natural Product Training | GNPS, Molecular Networking, Library Search, Quantitative Analysis, NP Database Search, De novo cyclopeptide sequencing | Dec 12/13 2018 | Louis-Felix Nothias, Daniel Petras | Download | |
| EMSC Workshop 2018 | This short course is aimed at explaining how to use the METASPACE and GNPS platforms for large scale data analysis in mass spectrometry (MS) based metabolomics experiments | March 11, 2018 | Daniel Petras, Pieter Dorrestein | Download | |
| GNPS workshop in Grahamstown, South Africa (Rhodes University) | GNPS introduction with Molecular Networking | November 14, 2018 | Emily Gentry, Allegra Aron, Daniel Petras | N/A | |
| ASP 2018 | GNPS Introduction, Molecular Networking - Natural Product Discovery in bacterial extraction, `ili 3D cartography, MASST - leveraging public datasets | July 2018 | Mingxun Wang, Pieter Dorrestein, Mauricio Caraballo, Kyo Bin Kang | Download | |
| Metabolomics 2018 | GNPS Introduction, Molecular Networking - Food Analysis, `ili 3D cartography of plants, MS2LDA | July 2018 | Coming Soon |
Community Tutorials¶
| Description | Link |
|---|---|
| MS-Dial and GNPS in Portuguese | YouTube |
Page Contributors¶
Last update:
September 23, 2022 17:14:38